Summary
Overview
Work History
Education
Skills
Achievements
Languages
Timeline
Generic

Ayako YAMAKAWA

Tokyo

Summary

Adept at critical thinking and deep-dive data analysis, I spearheaded collaborative microbiology research projects at LMGM, CBI Toulouse, CNRS, and Tokyo Institute of Technology. My work led to groundbreaking insights into bacterial toxin proteins, significantly advancing scientific understanding. Skilled in scientific writing and presentations, I excel in transforming complex data into actionable knowledge. Effective Student committed to learning, developing skills in Biology and team contribution. Self-directed and energetic with superior performance in both autonomous or collaborative environments working independently and collaborating with others on group projects.

Overview

3
3
years of professional experience

Work History

PhD Student

Tokyo Institute of Technology/LMGM
04.2022 - Current
  • Published research from the Master's program titled "A method to enrich polypeptidyl-tRNAs to capture snapshots of translation in the cell."
  • Employed the established methodology above to investigate toxin proteins present in Mycobacterium tuberculosis and other bacterial species.
  • Achieved new biological insights through the analysis of toxin proteins using the developed methodology.
  • Conducted experiments to elucidate the role of toxin proteins in bacterial translation and cellular processes.

Research Engineer

LMGM, CBI Toulouse, CNRS
01.2022 - 12.2022
  • Led three collaborative research projects in microbiology in partnership with Tokyo Institute of Technology.
  • Discussed and planned experimental approaches and data analysis for a research project conducted at Toulouse University focused on the identification of proteomes and individual intracellular proteins using mass spectrometry.
  • Developed experimental protocols and methodologies for protein identification and characterization.
  • Analyzed complex mass spectrometry data to derive insights into protein expression and functions.
  • Collaborated with multidisciplinary teams to ensure the successful progress of research projects.

Education

Ph.D. - Cellular Biology

Tokyo Institute of Technology
Tokyo, Japan
09-2025

Master of Science - Cellular Biology

Tokyo Institute of Technology
03-2022

Bachelor of Science - Biotechnology

Tokyo Institute of Technology
03-2019

Skills

  • Critical Thinking
  • Delivering Presentations
  • Attention to Detail
  • Documentation And Reporting
  • Research processes
  • Deep-dive data analysis
  • Scientific Writing
  • Research proposals
  • Data Analysis
  • MS Office

Achievements

1. Yamakawa A, Niwa T, Chadani Y, Kobo A, Taguchi H. A method to enrich polypeptidyl-tRNAs to capture snapshots of translation in the cell. Nucleic Acids Res Jan 30:gkac1276.(2023) doi: 10.1093/nar/gkac1276. (open access)

2. Ito Y, Chadani Y, Niwa T, Yamakawa A, Machida K, Imataka H, Taguchi H. Nascent peptide- induced translation discontinuation in eukaryotes impacts biased amino acid usage in proteomes. Nat Commun 13:7451 (2022) doi: 10.1038/s41467-022-35156-x.

3. Yushin Ando, Akinao Kobo, Tatsuya Niwa, Ayako Yamakawa, Suzuna Konoma, Yuki Kobayashi, Osamu Nureki, Hideki Taguchi, Yuzuru Itoh, Yuhei Chadani
A newly-identified mini-hairpin shaped nascent peptide blocks translation termination by a novel mechanism. bioRxiv   doi: https://doi.org/10.1101/2024.05.31.596752

Languages

Japanese
Native language
English
Upper intermediate
B2
French
Upper intermediate
B2

Timeline

PhD Student

Tokyo Institute of Technology/LMGM
04.2022 - Current

Research Engineer

LMGM, CBI Toulouse, CNRS
01.2022 - 12.2022

Ph.D. - Cellular Biology

Tokyo Institute of Technology

Master of Science - Cellular Biology

Tokyo Institute of Technology

Bachelor of Science - Biotechnology

Tokyo Institute of Technology
Ayako YAMAKAWA